MARVEL (version 1.4.0)

CompareExpr: Compares gene expression changes based on nonsense-mediated decay (NMD) status

Description

Compares gene expression changes based on NMD status for each splicing event type.

Usage

CompareExpr(MarvelObject, xlabels.size = 8)

Value

An object of class S3 new slots MarvelObject$NMD$NMD.Expr$Table, MarvelObject$NMD$NMD.Expr$Plot, and MarvelObject$NMD$NMD.Expr$Plot.Stats.

Arguments

MarvelObject

Marvel object. S3 object generated from FindPTC function.

xlabels.size

Numeric value. Size of the x-axis tick labels. Default is 8.

Examples

marvel.demo <- readRDS(system.file("extdata/data", "marvel.demo.rds", package="MARVEL"))

marvel.demo <- CompareExpr(MarvelObject=marvel.demo)

# Check outputs
head(marvel.demo$NMD$NMD.Expr$Table)
marvel.demo$NMD$NMD.Expr$Plot
marvel.demo$NMD$NMD.Expr$Plot.Stats