IsoSwitch.PlotExpr

Plots delta PSI vs gene log2-fold change

Alternative splicing represents an additional and underappreciated layer of complexity underlying gene expression profiles. Nevertheless, there remains hitherto a paucity of software to investigate splicing dynamics at single-cell resolution. 'MARVEL' enables splicing analysis of single-cell RNA-sequencing data generated from plate- and droplet-based library preparation methods.

Sean Wen

MARVEL

Revealing Splicing Dynamics at Single-Cell Resolution

IsoSwitch.PlotExpr function

<dl><dt>MarvelObject</dt>
<dd>Marvel object. S3 object generated from <code>CompareValues.Genes.10x</code> function.</dd>
<dt>anno</dt>
<dd>Logical value. If set to <code>TRUE</code>, genes with coordinated, opposing or complex change relative to splicing change will be annotated on the plot. Default value is <code>FALSE</code>.</dd></dl>

Arguments

Plot gene-splicing relative change — IsoSwitch.PlotExpr

<dl>

<dt>MarvelObject</dt>
<dd>Marvel object. S3 object generated from <code>CompareValues.Genes.10x</code> function.</dd>


<dt>anno</dt>
<dd>Logical value. If set to <code>TRUE</code>, genes with coordinated, opposing or complex change relative to splicing change will be annotated on the plot. Default value is <code>FALSE</code>.</dd>

</dl>

IsoSwitch.PlotExpr: Plot gene-splicing relative change

Description

Usage

Value

Arguments

Examples