MARVEL (version 1.4.0)

adhocGene.DE.Gene.10x: Differential gene expression analysis of specified gene

Description

Performs differential gene expression analysis specified gene across for all possible pairs of cell groups. The gene and cell groups were defined earlier in adhocGene.TabulateExpression.Gene.10x function.

Usage

adhocGene.DE.Gene.10x(MarvelObject)

Value

An object of class S3 with new slots MarvelObject$adhocGene$DE$Gene$Data.

Arguments

MarvelObject

Marvel object. S3 object generated from adhocGene.TabulateExpression.Gene.10x function.

Examples

marvel.demo.10x <- readRDS(system.file("extdata/data",
                               "marvel.demo.10x.rds",
                               package="MARVEL")
                               )

marvel.demo.10x <- adhocGene.DE.Gene.10x(MarvelObject=marvel.demo.10x)

# Check output
marvel.demo.10x$adhocGene$DE$Gene$Data