Tests for a change in ET binomial proportion or mean of positive ET Likelihood Ratio Test for SingleCellAssay objects
LRT(sca, comparison, ...)# S4 method for SingleCellAssay,character
LRT(sca, comparison, referent = NULL,
groups = NULL, returnall = FALSE)
A SingleCellAssay class object
A character specifying the factor for comparison
ignored
A character specifying the reference level of comparison.
A optional character specifying a variable on which to stratify the test. For each level of groups, there will be a separate likelihood ratio test.
A logical specifying if additional columns should be returned with information about the different components of the test.
Combined Likelihood ratio test (binomial and normal) for SingleCellAssay and derived objects. This function is deprecated, please use lrTest instead.
zlm.SingleCellAssay, ZlmFit