normCoef

Deduce MA Normalization Coefficients

Chromatin immunoprecipitation followed by high-throughput
sequencing (ChIP-seq) is the premier technology for profiling genome-wide
localization of chromatin-binding proteins, including transcription
factors and histones with various modifications.
This package provides a robust method for normalizing ChIP-seq
signals across individual samples or groups of samples. It also designs
a self-contained system of statistical models for calling differential
ChIP-seq signals between two or more biological conditions as well as
for calling hypervariable ChIP-seq signals across samples. Refer to
Tu et al. (2021) <doi:10.1101/gr.262675.120> and
Chen et al. (2022) <doi:10.1186/s13059-022-02627-9>
for associated statistical details.

Shiqi Tu

MAnorm2

Tools for Normalizing and Comparing ChIP-seq Samples

normCoef function

<dl><dt>baseline</dt>
<dd>A numeric vector representing the baseline signal intensity.</dd>
<dt>to.norm</dt>
<dd>A numeric vector representing the sample to be normalized.</dd></dl>

Arguments

Deduce MA Normalization Coefficients — normCoef

<dl>

<dt>baseline</dt>
<dd>A numeric vector representing the baseline signal intensity.</dd>


<dt>to.norm</dt>
<dd>A numeric vector representing the sample to be normalized.</dd>

</dl>

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normCoef: Deduce MA Normalization Coefficients

Description

Usage

Value

Arguments