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MBI (version 1.0)

(M)ultiple-site (B)iodiversity (I)ndices Calculator

Description

Over 20 multiple-site diversity indices can be calculated. Later versions will include phylogenetic diversity

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Version

Install

install.packages('MBI')

Monthly Downloads

8

Version

1.0

License

GPL-2

Maintainer

Youhua Chen

Last Published

October 20th, 2012

Functions in MBI (1.0)

cl

calculate Lennon's multiple-site richness index
ml

calculate the average Lennon's pairwise-site richness index
mn

Calculate the average of Baselga's pairwise-site nestedness index across all pairs of sites
do

Calculate Diserud-Odegaard's index
wnodf

Calculate Almeida-Neto and Ulrich's nestedness index
wt

Calculate Williams's turnover index
wbeta

Calculate Whittaker's beta diversity index
mjaccard

Calculate the average of Jaccard pairwise-site dissimilarity index across all pairs of sites
mrich

Calculate the average of Carvalho's pairwise-site richness difference index across all pairs of sites
batch.calculation

calculate all diversity indices at the same time
crep

Calculate Carvalho's multiple-site replacement index
MBI-package

MBI: (M)ultiple-site (B)iodiversity (I)ndices Calculator
crich

Calculate Carvalho's multiple-site richness difference index
harrison

Calculate Harrison's dissimilarity index
cfull

calculate Baselga's biodiversity index (nestdness+turnover)
ct

Calculate Baselga's multiple-site turnover index
mrep

Calculate the average of Carvalho's pairwise-site replacement index across all pairs of sites
ht

Calculate Harrison's turnover index
msorensen

Calculate the average of Sorensen pairwise-site dissimilarity index across all pairs of sites
cn

Calculate Baselga's multiple-site nestedness index
mt

Calculate the average of Baselga's pairwise-site turnover index across all pairs of sites
rarity

Calculate rarity degrees (decided by the argument "percent") based on distributional ranges of species and abundance of species