ID, information, count data of RNA reads,t-value and rho-value, symbol.
Format
A data frame with 13409 observations on the following 16 variables.
tagid
a numeric vector
geneid
a numeric vector
name
a string vector
chr
a string vector
strand
a character vector
pos
a numeric vector
anno
a string vector
Jurk.NS.A
a numeric vector
Jurk.NS.B
a numeric vector
Jurk.NS.C
a numeric vector
Jurk.48h.A
a numeric vector
Jurk.48h.B
a numeric vector
Jurk.48h.C
a numeric vector
beta_t
a numeric vector
rho
a numeric vector
symb
a character vector
Details
t-values (beta_t)and means over all replicate libraries in two conditions are used to make MA plot. The count data of DE isoforms are selected by symb ="+" and W(omega) and used to make heatmap using myheatmap function.
References
Yuan-De Tan Anita M. Chandler, Arindam Chaudhury, and Joel R. Neilson(2015) A Powerful Statistical Approach for Large-scale Differential Transcription Analysis.Plos One. DOI: 10.1371/journal.pone.0123658.