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MCMCglmm (version 2.28)
MCMC Generalised Linear Mixed Models
Description
MCMC Generalised Linear Mixed Models.
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Install
install.packages('MCMCglmm')
Monthly Downloads
9,015
Version
2.28
License
GPL (>= 2)
Maintainer
Jarrod Hadfield
Last Published
February 8th, 2019
Functions in MCMCglmm (2.28)
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MCMCglmm
Multivariate Generalised Linear Mixed Models
MCMCglmm-package
Multivariate Generalised Linear Mixed Models
buildV
Forms expected (co)variances for GLMMs fitted with MCMCglmm
commutation
Commutation Matrix
knorm
(Mixed) Central Moments of a Multivariate Normal Distribution
PlodiaPO
Phenoloxidase measures on caterpillars of the Indian meal moth.
PlodiaR
Resistance of Indian meal moth caterpillars to the granulosis virus PiGV.
krzanowski.test
Krzanowski's Comparison of Subspaces
PlodiaRB
Resistance (as a binary trait) of Indian meal moth caterpillars to the granulosis virus PiGV.
Ptensor
Tensor of Sample (Mixed) Central Moments
kunif
Central Moments of a Uniform Distribution
spl
Orthogonal Spline Design Matrix
summary.MCMCglmm
Summarising GLMM Fits from MCMCglmm
list2bdiag
Forms the direct sum from a list of matrices
predict.MCMCglmm
Predict method for GLMMs fitted with MCMCglmm
prunePed
Pedigree pruning
BTdata
Blue Tit Data for a Quantitative Genetic Experiment
BTped
Blue Tit Pedigree
at.level
Incidence Matrix of Levels within a Factor
posterior.cor
Transforms posterior distribution of covariances into correlations
posterior.evals
Posterior distribution of eigenvalues
residuals.MCMCglmm
Residuals form a GLMM fitted with MCMCglmm
rtcmvnorm
Random Generation from a Truncated Conditional Normal Distribution
Dtensor
Tensor of (mixed) partial derivatives
at.set
Incidence Matrix of Combined Levels within a Factor
me
Design Matrix for Measurement Error Model
Ddivergence
d-divergence
Dexpressions
List of unevaluated expressions for (mixed) partial derivatives of fitness with respect to linear predictors.
SShorns
Horn type and genders of Soay Sheep
KPPM
Kronecker Product Permutation Matrix
Tri2M
Lower/Upper Triangle Elements of a Matrix
mult.memb
Design Matrices for Multiple Membership Models
path
Design Matrix for Path Analyses
dcmvnorm
Density of a (conditional) multivariate normal variate
posterior.inverse
Posterior distribution of matrix inverse
posterior.mode
Estimates the marginal parameter modes using kernel density estimation
plot.MCMCglmm
Plots MCMC chains from MCMCglmm using plot.mcmc
rIW
Random Generation from the Conditional Inverse Wishart Distribution
evalDtensor
Evaluates a list of (mixed) partial derivatives
rbv
Random Generation of MVN Breeding Values and Phylogenetic Effects
sir
Design Matrix for Simultaneous and Recursive Relationships between Responses
sm2asreml
Converts sparseMatrix to asreml's giv format
gelman.prior
Prior Covariance Matrix for Fixed Effects.
inverseA
Inverse Relatedness Matrix and Phylogenetic Covariance Matrix
plotsubspace
Plots covariance matrices
posterior.ante
Posterior distribution of ante-dependence parameters
rtnorm
Random Generation from a Truncated Normal Distribution
simulate.MCMCglmm
Simulate method for GLMMs fitted with MCMCglmm