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MCMCglmm (version 2.29)
MCMC Generalised Linear Mixed Models
Description
MCMC Generalised Linear Mixed Models.
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Install
install.packages('MCMCglmm')
Monthly Downloads
5,490
Version
2.29
License
GPL (>= 2)
Maintainer
Jarrod Hadfield
Last Published
April 24th, 2019
Functions in MCMCglmm (2.29)
Search functions
buildV
Forms expected (co)variances for GLMMs fitted with MCMCglmm
at.level
Incidence Matrix of Levels within a Factor
gelman.prior
Prior Covariance Matrix for Fixed Effects.
commutation
Commutation Matrix
sir
Design Matrix for Simultaneous and Recursive Relationships between Responses
posterior.ante
Posterior distribution of ante-dependence parameters
plotsubspace
Plots covariance matrices
sm2asreml
Converts sparseMatrix to asreml's giv format
inverseA
Inverse Relatedness Matrix and Phylogenetic Covariance Matrix
knorm
(Mixed) Central Moments of a Multivariate Normal Distribution
SShorns
Horn type and genders of Soay Sheep
PlodiaRB
Resistance (as a binary trait) of Indian meal moth caterpillars to the granulosis virus PiGV.
dcmvnorm
Density of a (conditional) multivariate normal variate
me
Design Matrix for Measurement Error Model
Tri2M
Lower/Upper Triangle Elements of a Matrix
mult.memb
Design Matrices for Multiple Membership Models
Dexpressions
List of unevaluated expressions for (mixed) partial derivatives of fitness with respect to linear predictors.
posterior.cor
Transforms posterior distribution of covariances into correlations
krzanowski.test
Krzanowski's Comparison of Subspaces
Ptensor
Tensor of Sample (Mixed) Central Moments
evalDtensor
Evaluates a list of (mixed) partial derivatives
posterior.evals
Posterior distribution of eigenvalues
posterior.inverse
Posterior distribution of matrix inverse
at.set
Incidence Matrix of Combined Levels within a Factor
posterior.mode
Estimates the marginal parameter modes using kernel density estimation
rIW
Random Generation from the Conditional Inverse Wishart Distribution
kunif
Central Moments of a Uniform Distribution
rbv
Random Generation of MVN Breeding Values and Phylogenetic Effects
path
Design Matrix for Path Analyses
rtnorm
Random Generation from a Truncated Normal Distribution
list2bdiag
Forms the direct sum from a list of matrices
predict.MCMCglmm
Predict method for GLMMs fitted with MCMCglmm
residuals.MCMCglmm
Residuals form a GLMM fitted with MCMCglmm
prunePed
Pedigree pruning
simulate.MCMCglmm
Simulate method for GLMMs fitted with MCMCglmm
plot.MCMCglmm
Plots MCMC chains from MCMCglmm using plot.mcmc
summary.MCMCglmm
Summarising GLMM Fits from MCMCglmm
spl
Orthogonal Spline Design Matrix
rtcmvnorm
Random Generation from a Truncated Conditional Normal Distribution
Ddivergence
d-divergence
Dtensor
Tensor of (mixed) partial derivatives
KPPM
Kronecker Product Permutation Matrix
MCMCglmm
Multivariate Generalised Linear Mixed Models
MCMCglmm-package
Multivariate Generalised Linear Mixed Models
PlodiaPO
Phenoloxidase measures on caterpillars of the Indian meal moth.
PlodiaR
Resistance of Indian meal moth caterpillars to the granulosis virus PiGV.
BTdata
Blue Tit Data for a Quantitative Genetic Experiment
BTped
Blue Tit Pedigree