MCMCglmm v2.29

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MCMC Generalised Linear Mixed Models

MCMC Generalised Linear Mixed Models.

Functions in MCMCglmm

Name Description
buildV Forms expected (co)variances for GLMMs fitted with MCMCglmm
at.level Incidence Matrix of Levels within a Factor
gelman.prior Prior Covariance Matrix for Fixed Effects.
commutation Commutation Matrix
sir Design Matrix for Simultaneous and Recursive Relationships between Responses
posterior.ante Posterior distribution of ante-dependence parameters
plotsubspace Plots covariance matrices
sm2asreml Converts sparseMatrix to asreml's giv format
inverseA Inverse Relatedness Matrix and Phylogenetic Covariance Matrix
knorm (Mixed) Central Moments of a Multivariate Normal Distribution
SShorns Horn type and genders of Soay Sheep
PlodiaRB Resistance (as a binary trait) of Indian meal moth caterpillars to the granulosis virus PiGV.
dcmvnorm Density of a (conditional) multivariate normal variate
me Design Matrix for Measurement Error Model
Tri2M Lower/Upper Triangle Elements of a Matrix
mult.memb Design Matrices for Multiple Membership Models
Dexpressions List of unevaluated expressions for (mixed) partial derivatives of fitness with respect to linear predictors.
posterior.cor Transforms posterior distribution of covariances into correlations
krzanowski.test Krzanowski's Comparison of Subspaces
Ptensor Tensor of Sample (Mixed) Central Moments
evalDtensor Evaluates a list of (mixed) partial derivatives
posterior.evals Posterior distribution of eigenvalues
posterior.inverse Posterior distribution of matrix inverse
at.set Incidence Matrix of Combined Levels within a Factor
posterior.mode Estimates the marginal parameter modes using kernel density estimation
rIW Random Generation from the Conditional Inverse Wishart Distribution
kunif Central Moments of a Uniform Distribution
rbv Random Generation of MVN Breeding Values and Phylogenetic Effects
path Design Matrix for Path Analyses
rtnorm Random Generation from a Truncated Normal Distribution
list2bdiag Forms the direct sum from a list of matrices
predict.MCMCglmm Predict method for GLMMs fitted with MCMCglmm
residuals.MCMCglmm Residuals form a GLMM fitted with MCMCglmm
prunePed Pedigree pruning
simulate.MCMCglmm Simulate method for GLMMs fitted with MCMCglmm
plot.MCMCglmm Plots MCMC chains from MCMCglmm using plot.mcmc
summary.MCMCglmm Summarising GLMM Fits from MCMCglmm
spl Orthogonal Spline Design Matrix
rtcmvnorm Random Generation from a Truncated Conditional Normal Distribution
Ddivergence d-divergence
Dtensor Tensor of (mixed) partial derivatives
KPPM Kronecker Product Permutation Matrix
MCMCglmm Multivariate Generalised Linear Mixed Models
MCMCglmm-package Multivariate Generalised Linear Mixed Models
PlodiaPO Phenoloxidase measures on caterpillars of the Indian meal moth.
PlodiaR Resistance of Indian meal moth caterpillars to the granulosis virus PiGV.
BTdata Blue Tit Data for a Quantitative Genetic Experiment
BTped Blue Tit Pedigree
No Results!

Vignettes of MCMCglmm

Name
Figures/CourseNotes.Rnw
Figures/Overview.Rnw
Figures/TEST.R
Figures/Tutorial.Rnw
Figures/buildCN.R
Figures/defaults.R
CourseNotes.Rnw
CourseNotes.bib
Lecture1-006.pdf
Lecture1-011.pdf
Lecture1-015.pdf
Lecture1-023.pdf
Lecture1-027.pdf
Lecture1-034.pdf
Lecture1-041.pdf
Lecture1-049.pdf
Lecture1-052.pdf
Lecture1-055.pdf
Lecture1-058.pdf
Lecture1-060.pdf
Lecture1-065.pdf
Lecture1-071.pdf
Lecture1-075.pdf
Lecture1.tex
Lecture2-007.pdf
Lecture2-019.pdf
Lecture2-023.pdf
Lecture2-029.pdf
Lecture2-030.pdf
Lecture2-037.pdf
Lecture2-038.pdf
Lecture2-046.pdf
Lecture2-050.pdf
Lecture2-052.pdf
Lecture2-055.pdf
Lecture2-066.pdf
Lecture2-068.pdf
Lecture2-070.pdf
Lecture2-072.pdf
Lecture2-074.pdf
Lecture2-081.pdf
Lecture2-085.pdf
Lecture2.tex
Lecture3-005.pdf
Lecture3-018.pdf
Lecture3-025.pdf
Lecture3-028.pdf
Lecture3.tex
Lecture4-005.pdf
Lecture4-011.pdf
Lecture4-014.pdf
Lecture4-017.pdf
Lecture4-022.pdf
Lecture4-026.pdf
Lecture4-030.pdf
Lecture4-034.pdf
Lecture4-037.pdf
Lecture4-040.pdf
Lecture4.tex
Lecture5-011.pdf
Lecture5-016.pdf
Lecture5-024.pdf
Lecture5-029.pdf
Lecture5-039.pdf
Lecture5-043.pdf
Lecture5-046.pdf
Lecture5.tex
Lecture6-006.pdf
Lecture6.tex
Lecture7.tex
Lecture8-005.pdf
Lecture8-012.pdf
Lecture8-015.pdf
Lecture8-018.pdf
Lecture8-021.pdf
Lecture8-023.pdf
Lecture8.tex
Lecture9.tex
Overview-Sol.pdf
Overview-VCV.pdf
Overview.Rnw
Overview.bib
axes.pdf
rgl1.pdf
rgl2.pdf
No Results!

Last month downloads

Details

Date 2019-04-16
License GPL (>= 2)
SystemRequirements C++11
NeedsCompilation yes
Packaged 2019-04-17 15:03:49 UTC; jhadfiel
Repository CRAN
Date/Publication 2019-04-24 10:50:07 UTC

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