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MCMCpack (version 0.4-5)

MCMCirtKd: Markov chain Monte Carlo for K-Dimensional Item Response Theory Model

Description

This function generates a posterior density sample from a K-dimensional item response theory (IRT) model, with standard Normal priors on the subject abilities (ideal points), and Normal priors on the item parameters. The user supplies data and priors, and a sample from the posterior density is returned as an mcmc object, which can be subsequently analyzed with functions provided in the coda package.

Usage

MCMCirtKd(datamatrix, dimensions, item.constraints=list(),
   burnin = 1000, mcmc = 10000, thin=5, verbose = FALSE, seed = 0,
   alphabeta.start = NA, b0 = 0, B0=0, store.item = FALSE,
   store.ability=TRUE, drop.constantvars=TRUE, ... )

Arguments

datamatrix
The matrix of data. Must be 0, 1, or missing values. It is of dimensionality items by subjects.
dimensions
The number of dimensions in the latent space.
item.constraints
List of lists specifying possible equality or simple inequality constraints on the item parameters. A typical entry in the list has one of three forms: rowname=list(d,c) which will constrain the dth item parameter for the item nam
burnin
The number of burn-in iterations for the sampler.
mcmc
The number of iterations for the sampler.
thin
The thinning interval used in the simulation. The number of iterations must be divisible by this value.
verbose
A switch which determines whether or not the progress of the sampler is printed to the screen. If TRUE, the iteration number and the subject abilities (ideal points) are printed to the screen.
seed
The seed for the random number generator. The code uses the Mersenne Twister, which requires an integer as an input. If nothing is provided, the Scythe default seed is used.
alphabeta.start
The starting values for the $\alpha$ and $\beta$ difficulty and discrimination parameters. If alphabeta.start is set to a scalar the starting value for all unconstrained item parameters will be set to that scalar. If alp
b0
The prior means of the $\alpha$ and $\beta$ difficulty and discrimination parameters, stacked for all items. If a scalar is passed, it is used as the prior mean for all items.
B0
The prior precisions (inverse variances) of the independent Normal prior on the item parameters. Can be either a scalar or a matrix of dimension $(K+1) \times items$.
store.item
A switch that determines whether or not to store the item parameters for posterior analysis. NOTE: This takes an enormous amount of memory, so should only be used if the chain is thinned heavily, or for applications with a small numbe
store.ability
A switch that determines whether or not to store the subject abilities for posterior analysis. By default, the item parameters are all stored.
drop.constantvars
A switch that determines whether or not items and subjects that have no variation should be deleted before fitting the model. Default = TRUE.
...
further arguments to be passed

Value

  • An mcmc object that contains the posterior density sample. This object can be summarized by functions provided by the coda package.

Details

MCMCirtKd simulates from the posterior density using standard Gibbs sampling using data augmentation (a Normal draw for the subject abilities, a multivariate Normal draw for the item parameters, and a truncated Normal draw for the latent utilities). The simulation proper is done in compiled C++ code to maximize efficiency. Please consult the coda documentation for a comprehensive list of functions that can be used to analyze the posterior density sample. The default number of burnin and mcmc iterations is much smaller than the typical default values in MCMCpack. This is because fitting this model is extremely computationally expensive. It does not mean that this small of a number of scans will yield good estimates. If the verbose option is chosen, output will be printed to the screen every fifty iterations. The priors of this model need to be proper for identification purposes. The user is asked to provide prior means and precisions (not variances) for the item parameters and the subject parameters. The model takes the following form. We assume that each subject has an subject ability (ideal point) denoted $\theta_j$ $(K \times 1)$, and that each item has a difficulty parameter $\alpha_i$ and discrimination parameter $\beta_i$ $(K \times 1)$. The observed choice by subject $j$ on item $i$ is the observed data matrix which is $(I \times J)$. We assume that the choice is dictated by an unobserved utility: $$z_{i,j} = \alpha_i + \beta_i' \theta_j + \varepsilon_{i,j}$$ Where the errors are assumed to be distributed standard Normal. The parameters of interest are the subject abilities (ideal points) and the item parameters.

We assume the following priors. For the subject abilities (ideal points) we assume independent standard Normal priors: $$\theta_{j,k} \sim \mathcal{N}(0,1)$$ These cannot be changed by the user. For each item parameter, we assume independent Normal priors: $$\left[\alpha_i, \beta_i \right]' \sim \mathcal{N}_{(K+1)} (b_{0,i},B_{0,i})$$ Where $B_{0,i}$ is a diagonal matrix. One can specify a separate prior mean and precision for each item parameter. The model is identified by the constraints on the item parameters (see Jackman 2001). The user cannot place constraints on the subect abilities. This identification scheme differs from that in MCMCirt1d, which uses a single directional constraint on one subject ability. However, in our experience, using subject ability constraints for models in greater than one dimension does not work particularly well.

References

James H. Albert. 1992. ``Bayesian Estimation of Normal Ogive Item Response Curves Using Gibbs Sampling." Journal of Educational Statistics. 17: 251-269. Joshua Clinton, Simon Jackman, and Douglas Rivers. 2000. ``The Statistical Analysis of Legislative Behavior: A Unified Approach." Paper presented at the Annual Meeting of the Political Methodology Society. Simon Jackman. 2001. ``Multidimensional Analysis of Roll Call Data via Bayesian Simulation.'' Political Analysis. 9: 227-241. Valen E. Johnson and James H. Albert. 1999. ``Ordinal Data Modeling." Springer: New York.

Andrew D. Martin, Kevin M. Quinn, and Daniel Pemstein. 2003. Scythe Statistical Library 0.4. http://scythe.wustl.edu. Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2002. Output Analysis and Diagnostics for MCMC (CODA). http://www-fis.iarc.fr/coda/.

See Also

plot.mcmc,summary.mcmc, MCMCirt1d, MCMCordfactanal

Examples

Run this code
data(SupremeCourt)
   # note that the rownames (the item names) are "1", "2", etc
   posterior1 <- MCMCirtKd(SupremeCourt, dimensions=1,
                   burnin=5000, mcmc=50000, thin=10,
                   B0=.25, store.item=TRUE,
                   item.constraints=list("1"=list(2,"-")))
   plot(posterior1)
   summary(posterior1)


   data(Senate)
   rownames(Senate) <- Senate$member
   # note that we need to transpose the data to get
   # the bills on the rows
   posterior2 <- MCMCirtKd(t(Senate[,6:677]), dimensions=2,
                   burnin=5000, mcmc=50000, thin=10,
                   item.constraints=list(rc2=list(2,"-"), rc2=c(3,0),
                                         rc3=list(3,"-")),
                   B0=.25)
   plot(posterior2)
   summary(posterior2)

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