MCRestimate v2.24.0
Misclassification error estimation with cross-validation
This package includes a function for combining
preprocessing and classification methods to calculate
misclassification errors
Functions in MCRestimate
Name | Description | |
class.factor.format | A function for creating a factor from the phenoData slot of an exprSet | |
ClassifierBuild | Building a classifier as a combination of preprocessing and classification method | |
select.NA.elements | Selects NA values of a given numeric matrix | |
SVM.OVA.wrap | SVM with 'One-Versus-All' multiclass approach | |
MCRindError | Individual Error of the outer cross-validations | |
MCRconfusion | Summary tables for MCRestimate objects | |
MCRestimate | Estimation of misclassification error by cross-validation | |
PLR | A function which performs penalised logistic regression classification for two groups | |
replace.NA | Replaces in a given numeric matrix NA values per row or per column. | |
intersectList | A function for creating a all possible intersects for a list of sets. | |
RF.wrap | Wrapper function for different classification methods | |
important.variable.names | Writing tables with variable information | |
varSel.highest.var | Variable selection and cluster functions | |
MCRestimateMerge | Merging objects of class MCRestimate | |
plot.MCRestimate | Plot method for a objects of class MCRestimate | |
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Details
Date | 21 April 2010 |
License | GPL (>= 2) |
LazyLoad | yes |
biocViews | Classification |
imports | Biobase (>= 2.5.5) , e1071 (>= 1.5-12) , graphics , grDevices , pamr (>= 1.22) , randomForest (>= 3.9-6) , RColorBrewer (>= 0.1-3) , stats , utils |
suggests | genefilter (>= 1.12.0) , gpls (>= 1.6.0) , ROC (>= 1.8.0) , xtable (>= 1.2-1) |
depends | golubEsets (>= 1.4.6) , R (>= 2.7.2) |
Contributors | Markus Ruschhaupt, Andreas Buness, Patrick Warnat, Axel Benner, Marc Johannes, Tim Beissbarth, Ulrich Mansmann, Wolfgang Huber, Holger Froehlich |
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