compileModel

This function translates MCSim model specification text to C and then
compiles the resulting C file to create a dynamic link library (DLL) file (on
Windows) or a shared object (SO) file (on Unix).

Tools that facilitate ordinary differential equation (ODE) modeling in 'R'. This package allows one to perform simulations for ODE models that are encoded in the GNU 'MCSim' model specification language (Bois, 2009) <doi:10.1093/bioinformatics/btp162> using ODE solvers from the 'R' package 'deSolve' (Soetaert et al., 2010) <doi:10.18637/jss.v033.i09>.

Dustin Kapraun

MCSimMod

Working with 'MCSim' Models

Dustin F. Kapraun

Todd J. Zurlinden

Andrew J. Shapiro

Ryan D. Friese

Frederic Y. Bois

Free Software Foundation, Inc. 

compileModel function

<dl><dt>model_file</dt>
<dd>Name of an MCSim model specification file.</dd>
<dt>c_file</dt>
<dd>Name of a C source code file to be created by compiling the MCSim model specification file.</dd>
<dt>dll_name</dt>
<dd>Name of a DLL or SO file without the extension (".dll" or ".so").</dd>
<dt>dll_file</dt>
<dd>Name of the same DLL or SO file with the appropriate extension (".dll" or ".so").</dd>
<dt>hash_file</dt>
<dd>Name of a file containing a hash key for determining if <code>model_file</code> has changed since the previous translation and compilation.</dd></dl>

Arguments

Function to translate and compile MCSim model specification text — compileModel

<dl>

<dt>model_file</dt>
<dd>Name of an MCSim model specification file.</dd>


<dt>c_file</dt>
<dd>Name of a C source code file to be created by compiling the MCSim model specification file.</dd>


<dt>dll_name</dt>
<dd>Name of a DLL or SO file without the extension (".dll" or ".so").</dd>


<dt>dll_file</dt>
<dd>Name of the same DLL or SO file with the appropriate extension (".dll" or ".so").</dd>


<dt>hash_file</dt>
<dd>Name of a file containing a hash key for determining if <code>model_file</code> has changed since the previous translation and compilation.</dd>

</dl>

compileModel: Function to translate and compile MCSim model specification text

Description

Usage

Value

Arguments