dmap

Calculates pairwise map distances from the recombination fraction.

Estimate genetic linkage maps for markers on a single chromosome (or in a single linkage group) from pairwise recombination fractions or intermarker distances using weighted metric multidimensional scaling. The methods are suitable for autotetraploid as well as diploid populations. Options for assessing the fit to a known map are also provided. Methods are discussed in detail in Preedy and Hackett (2016) <doi:10.1007/s00122-016-2761-8>.

Bram Boskamp

MDSMap

High Density Genetic Linkage Mapping using Multidimensional
Scaling

dmap function

<dl><dt>rf</dt>
<dd>A symmetric matrix of pairwise recombination fractions.</dd>
<dt>mapfn</dt>
<dd>A character string specifying the map function to be 
used in calculated the distance <code>'haldane'</code>, <code>'kosambi'</code>, <code>'none'</code>.</dd></dl>

Arguments

Calculates pairwise map distances from the recombination fraction. — dmap

<dl>

<dt>rf</dt>
<dd>A symmetric matrix of pairwise recombination fractions.</dd>


<dt>mapfn</dt>
<dd>A character string specifying the map function to be 
used in calculated the distance <code>'haldane'</code>, <code>'kosambi'</code>, <code>'none'</code>.</dd>

</dl>

dmap: Calculates pairwise map distances from the recombination fraction.

Description

Usage

Value

Arguments

Details

Examples