dmap.check

Reorders a distance map by a new marker order.

Estimate genetic linkage maps for markers on a single chromosome (or in a single linkage group) from pairwise recombination fractions or intermarker distances using weighted metric multidimensional scaling. The methods are suitable for autotetraploid as well as diploid populations. Options for assessing the fit to a known map are also provided. Methods are discussed in detail in Preedy and Hackett (2016) <doi:10.1007/s00122-016-2761-8>.

Bram Boskamp

MDSMap

High Density Genetic Linkage Mapping using Multidimensional
Scaling

dmap.check function

<dl><dt>distmap</dt>
<dd>A symmetric matrix of pairwise inter-marker distances.</dd>
<dt>newrank</dt>
<dd>A vector of scalars giving the new rank of each marker, markers 
should appear in the same order as in the distmap.</dd></dl>

Arguments

Reorders a distance map by a new marker order. — dmap.check

<dl>

<dt>distmap</dt>
<dd>A symmetric matrix of pairwise inter-marker distances.</dd>


<dt>newrank</dt>
<dd>A vector of scalars giving the new rank of each marker, markers 
should appear in the same order as in the distmap.</dd>

</dl>

dmap.check: Reorders a distance map by a new marker order.

Description

Usage

Value

Arguments

Details

Examples