MDplot (version 0.2)

dssp_ts: DSSP timeseries plot for secondary structure elements (proteins)

Description

Plots time-series for secondary structure motifs in the context of the widely used dssp algorithm. The default order is: "3-Helix", "4-Helix", "5-Helix", "Bend", "Beta-Bridge", "Beta-Strand", "Turn".

Usage

dssp_ts( tsData,
         printLegend = TRUE,
         timeBoundaries = NA,
         residueBoundaries = NA,
         timeUnit = NA,
         snapshotsPerTimeInt = 1000,
         barePlot = FALSE,
         ... )

Arguments

tsData

List consisting of lists, which are composed of a name (string) and a values table (x ... snapshots, y ... residues). Can be generated by MDplot::load_dssp_ts().

printLegend

If TRUE, a legend is printed on the right hand side of the plot.

timeBoundaries

A vector of boundaries for the time in snapshots (two elements).

residueBoundaries

A vector of boundaries for the residues (two elements).

timeUnit

If set, the snapshots are transformed into the respective time (in dependence of parameter snapshotsPerTime.

snapshotsPerTimeInt

Number of snapshots per respective timeUnit.

barePlot

Boolean, indicating whether the plot is to be made without any additional information.

...

Additional arguments (ellipsis).

Examples

dssp_ts( load_dssp_ts( system.file( "extdata", package = "MDplot" ) ) )