MDplot (version 0.2)

rmsf: Root-mean-square-fluctuation plot

Description

Plot one (or more) rmsf files as produced by molecular dynamics packages.

Usage

rmsf( rmsfData,
      printLegend = TRUE,
      rmsfUnit = "nm",
      colours = NA,
      residuewise = FALSE,
      numberXLabels = 7,
      names = NA,
      range = NA,
      barePlot = FALSE,
      ... )

Arguments

rmsfData

List of (alterating) atom numbers and rmsf values, as also produced by MDplot::load_rmsf() for example.

printLegend

Boolean, which triggers plotting of the legend.

rmsfUnit

Specifies, which unit the y-axis is given in.

colours

Vector of colours used for plotting.

residuewise

Boolean, specifying whether atoms or residues are plotted on the x-axis.

numberXLabels

Specifies, how many ticks are used on the x-axis.

names

Vector of the names of the trajectories.

range

Range of residues to be plotted.

barePlot

Boolean, indicating whether the plot is to be made without any additional information.

...

Additional arguments (ellipsis).

Examples

# two curves
rmsf( load_rmsf( c( system.file( "extdata/rmsf1_example.txt.gz", package = "MDplot" ),
                    system.file( "extdata/rmsf2_example.txt.gz", package = "MDplot" ) ) ) )