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MDplot (version 0.3.1)

rmsf: Root-mean-square-fluctuation plot

Description

Plot one (or more) rmsf files as produced by molecular dynamics packages.

Usage

rmsf( rmsfData, printLegend = TRUE, rmsfUnit = "nm", colours = NA, residuewise = FALSE, numberXLabels = 7, names = NA, range = NA, legendPosition = "topright", barePlot = FALSE, ... )

Arguments

rmsfData
List of (alterating) atom numbers and rmsf values, as also produced by load_rmsf() for example.
printLegend
Boolean, which triggers plotting of the legend.
rmsfUnit
Specifies, which unit the y-axis is given in.
colours
Vector of colours used for plotting.
residuewise
Boolean, specifying whether atoms or residues are plotted on the x-axis.
numberXLabels
Specifies, how many ticks are used on the x-axis.
names
Vector of the names of the trajectories.
range
Range of residues to be plotted.
legendPosition
Indicate position of legend: either "bottomright", "bottomleft", "topleft" or "topright".
barePlot
Boolean, indicating whether the plot is to be made without any additional information.
...
Additional arguments (ellipsis).