MEDIPS-package

MEDIPS


MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). 
Nevertheless, several functionalities may be applied to other types of sequencing data (e.g. differential coverage or testing the saturation of ChIP-seq data). 
MEDIPS addresses several aspects in the context of MeDIP-seq data analysis including basic data processing, several quality controls, normalization, and identification of differential coverage.


 package

MEDIPS was developed for analyzing data derived from
methylated DNA immunoprecipitation (MeDIP) experiments followed
by sequencing (MeDIP-seq). However, MEDIPS provides functionalities for the analysis of any kind of quantitative
sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others)
including calculation of differential coverage between groups
of samples and saturation and correlation analysis.

Lukas Chavez

DNA IP-seq data analysis

MEDIPS-package function

MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). 
Nevertheless, several functionalities may be applied to other types of sequencing data (e.g. differential coverage or testing the saturation of ChIP-seq data). 
MEDIPS addresses several aspects in the context of MeDIP-seq data analysis including basic data processing, several quality controls, normalization, and identification of differential coverage.

MEDIPS-package: (MeD)IP-seq data analysis

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