MEDIPS.mergeFrames


  is a filtered result table received by the MEDIPS.selectSig function.


frames


  allows an according number of bases as a gap between neighboring significant windows to be merged.
 The default value is 1 in order to merge adjacent windows.


distance


After having filtered the result table returned by the MEDIPS.meth function using the MEDIPS.selectSig function, there might be neighboring significant frames.
For these cases it is worthwhile to merge neighbouring regions into one supersized frame.


MEDIPS was developed for analyzing data derived from
methylated DNA immunoprecipitation (MeDIP) experiments followed
by sequencing (MeDIP-seq). However, MEDIPS provides functionalities for the analysis of any kind of quantitative
sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others)
including calculation of differential coverage between groups
of samples and saturation and correlation analysis.

Lukas Chavez

MEDIPS

DNA IP-seq data analysis

MEDIPS.mergeFrames function

is a filtered result table received by the MEDIPS.selectSig function.

allows an according number of bases as a gap between neighboring significant windows to be merged.
 The default value is 1 in order to merge adjacent windows.

After having filtered the result table returned by the MEDIPS.meth function using the MEDIPS.selectSig function, there might be neighboring significant frames.
For these cases it is worthwhile to merge neighbouring regions into one supersized frame.

MEDIPS.mergeFrames: Merges genomic coordinates of neighboring windows into one supersized window

Description

Usage

Arguments

Value

Examples