MEDIPS (version 1.22.0)

MEDIPS.plotSaturation: Function plots the results of the MEDIPS.saturationAnalysis function.

Description

The results of the saturation analysis will be visualized by the function.

Usage

MEDIPS.plotSaturation(saturationObj = NULL, main="Saturation analysis")

Arguments

saturationObj

The saturation results object returned by the MEDIPS.saturationAnalysis function

main

The title of the coverage plot.

Value

The coverage plot will be visualized.

Examples

library(MEDIPSData)
library(BSgenome.Hsapiens.UCSC.hg19)
bam.file.hESCs.Rep1.MeDIP = system.file("extdata", "hESCs.MeDIP.Rep1.chr22.bam", package="MEDIPSData")

sr=MEDIPS.saturation(file=bam.file.hESCs.Rep1.MeDIP, BSgenome="BSgenome.Hsapiens.UCSC.hg19", uniq=1e-3, extend=250, shift=0, window_size=100, chr.select="chr22", nit=10, nrit=1, empty_bins=TRUE, rank=FALSE)
MEDIPS.plotSaturation(saturationObj = sr, main="Saturation analysis")