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MEDME (version 1.32.0)

Modelling Experimental Data from MeDIP Enrichment

Description

MEDME allows the prediction of absolute and relative methylation levels based on measures obtained by MeDIP-microarray experiments

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Version

Version

1.32.0

License

GPL (>= 2)

Maintainer

Mattia Pelizzola

Last Published

February 15th, 2017

Functions in MEDME (1.32.0)

CGcount

Determining the count of CpG dinucleotides for a set of genomic locations
testMEDMEset

Dataset of class MEDMEset for testing MEDME
MEDME.writeFiles

writeFiles sgr or gff files from MEDME output
MEDME.readFiles

reading sgr or gff files for MEDME
smooth

Determining weighted MeDIP data
MEDME.predict

Applying the logistic model on MeDIP enrichment data
MEDMEset-class

Class "MEDMEset"
MEDME

Determining the logistic model of MeDIP enrichment in respect to the expected DNA methylation level