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MEDME (version 1.32.0)
Modelling Experimental Data from MeDIP Enrichment
Description
MEDME allows the prediction of absolute and relative methylation levels based on measures obtained by MeDIP-microarray experiments
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Version
Version
1.32.0
1.30.0
1.28.0
1.26.0
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Version
1.32.0
License
GPL (>= 2)
Maintainer
Mattia Pelizzola
Last Published
March 25th, 2009
Functions in MEDME (1.32.0)
Search functions
CGcount
Determining the count of CpG dinucleotides for a set of genomic locations
testMEDMEset
Dataset of class MEDMEset for testing MEDME
MEDME.writeFiles
writeFiles sgr or gff files from MEDME output
MEDME.readFiles
reading sgr or gff files for MEDME
smooth
Determining weighted MeDIP data
MEDME.predict
Applying the logistic model on MeDIP enrichment data
MEDMEset-class
Class "MEDMEset"
MEDME
Determining the logistic model of MeDIP enrichment in respect to the expected DNA methylation level