ConstructModel:
A set of functions for training of motif discovery algorithms.
Description
This function contains a set of functions for training of motif discovery algorithms. Specifically, the motif discovery algorithms are ITEME, MEME, MDscan, MATCH and Qresiduals.
Usage
ConstructModel(iicc, TF)
Arguments
iicc
Set of initial conditions for the MEET-package: mode, method, background,alignment,threshold,parameters,Transcriptionfactor,nummotif,lenmotif,sentit,position,missing,vector,gapopen,maxiters,gapextend
TF
A set of nucleotide sequences
Details
This function has two output: validation scores and ROC curve.