MEET (version 5.1.1)

CreateConsensus: Consensus Sequence for a DNA motif

Description

Using seqinr R package, constructs a consensus DNA sequences from a set of aligned Sequences

Usage

CreateConsensus(alignedSequences,iicc,filein)

Arguments

alignedSequences

Aligned DNA sequences

iicc

Initial options

filein

Fasta file with a set of aligned sequences with MEME

Value

SeqCons: Consensus sequence (if gaps a "Na" is returned)

Details

package "seqinr" is required

References

https://r-forge.r-project.org/projects/seqinr/

See Also

align.clustalw, align.MEME, read.aligned, align.muscle

Examples

require("MEET")
data(TranscriptionFactor)
data(iicc)
pathMEET <- system.file("sequences", package = "MEET")
SeqCons<-CreateConsensus(TranscriptionFactor,iicc,filein=NULL)