MEET (version 5.1.1)

PredictEntropy: PredictEntropy: Detection of Transcription Factor Binding Sites by means of Renyi entropy

Description

Detection of transcription factor binding sites through parametric uncertainty measurement (Renyi entropy). This detection algorithm evaluates the variation on the total Renyi entropy of a set of sequences when a candidate sequence is assumed to be a true binding site belonging to the set.

Usage

PredictEntropy(iicc)

Arguments

iicc

A set of inicial conditions for the MEET-package (mode, method, background, alignment, threshold, parameters, Transcriptionfactor, nummotif, lenmotif, sentit, position, missing, vector, gapopen, maxiters, gapextend)

Details

This function contains a set of function for the detection of transcription factor binding sites:correction.entropy.R, correction.redundancy.R, entropy.R entropy.max.R, entropy.corrected.R, probability.R, CalculRedundancy.R, diff.instructions.R, redundancy.R, ROC.R, detector_1rOrdre_diff.R, pvalue.R

See Also

PredictDivergence, PredictMEME, PredictMDscan, PredictPCA, PredictMATCH

Examples

require("MEET")
data(iicc)
PredictEntropy(iicc)