MEET (version 5.1.1)

PredictMATCH: MATCH algorithm to detect TFBS in a sequence

Description

The model constructed using the MATCH algorithm and the specific parameters for this method are used to detect TFBS within a sequence

Usage

PredictMATCH(iicc)

Arguments

iicc

options of the MEET program

Value

output: the detected sequences and its position within the sequence.

Detected Factors

factors detected

P-value

Similarity Score

Position

Position of the detected BS within the large DNA sequence

Details

Uses the MATCH constructed motif, and as a parameter the chosen corecut

See Also

MEET, kfold.MATCH, ModelMATCH

Examples

require("MEET")
data(iicc)
data(TranscriptionFactor)
iicc$method<-"MATCH"
iicc$parametersIdeal<-iicc$parameters
iicc$model<-ModelMATCH(iicc)
DetectedSequences<-PredictMATCH(iicc)