MEET (version 5.1.1)

PredictMDscan: MDscan algorithm to detect TFBS in a sequence

Description

MDscan constructed motif is used to find TFBS into the query sequence.

Usage

PredictMDscan(iicc)

Arguments

iicc

options of the MEET program

Value

output: the detected sequences and its position within the sequence.

Detected Factors

factors detected

P-value

Similarity Score

Position

Position of the detected BS within the large DNA sequence

Details

Uses the MEME constructed motif

See Also

MEET, kfold.MDscan, ModelMDscan