MEET (version 5.1.1)

correctionaprox: Correction Entropy Approximate from the Finite Sample Size Effect.

Description

Each training matrix is formed by a finite number of samples. The probability estimation error using the nucleotide frequency causes a bias on the uncertainty measurement The approximation method is used for sample size is more than or equal to 50.

Usage

correctionaprox(x, matriu, s)

Arguments

x

Maximum entropy

matriu

A set of aligned nucleotide sequences.

s

Number of symbols

Details

Sample size has to be > 50.

See Also

entropy, redundancy, correction.redundancy, correction.entropy

Examples

require("MEET")
data(RenyiOrder)
data(iicc)
s<-4
correctionaprox(x=iicc$HXmax,matriu=iicc$TranscriptionFactor,s)