MEET (version 5.1.1)

detection: Detection: A set of functions for detection of TFBS

Description

This function contains a set of functions for detection of Transcription Factor Binding Sites. Specifically, motif discovery algorithms are ITEME, MEME, MDscan, MATCH and Qresiduals.

Usage

detection(iicc)

Arguments

iicc

Set of initial conditions for the MEET-package: mode, method, background,alignment,pvalor,parameters,Transcriptionfactor, nummotif,lenmotif,sentit,position,missing,vector,gapopen, maxiters,gapextend

Details

The main parameter is method ( a set of motif discovery algorithms: ITEME(Entropy, divergence), Q-residuals, MEME, Match and MDscan)

See Also

MEET, ConstructModel

Examples

require("MEET")
data(iicc)
detection(iicc)