MEET (version 5.1.1)

diffInstructions: The measurement of the variation of the total redundancy

Description

This function measures the variation of the total redundancy.

Usage

diffInstructions(training.set, HX, HXmax, Herror, Redundancia_corregida)

Arguments

training.set

A set of aligned nucleotide sequences

HX

Entropy

HXmax

Maximum entropy

Herror

Entropy error. Correction of the Finite Sample Size Effect

Redundancia_corregida

Redundancy correction of the Finite Sample Size Effect

Details

This function depends on detector_1erOrdre_diff

Examples

require("MEET")
data(iicc)
data(BackgroundOrganism)
q<-iicc$q
training.set<-iicc$Transcriptionfactor
correction<-correction.entropy(q,p=nrow(training.set),long=1,iicc)
Herror<-slot(correction,"Herror")
HXmax<-iicc$HXmax
prob<-probability(training.set,Prob)
HX<-entropy.Shannon(prob)
Redundancia_corregida<-CalculRedundancy(training.set,q,iicc)
test<-diffInstructions (training.set,HX,HXmax,Herror,Redundancia_corregida)