kfold.transMEME


Set of initial conditions for the MEET-package: mode, method, background,alignment,threshold,parameters,Transcriptionfactor,nummotif,lenmotif,sentit,position,missing,vector,gapopen,maxiters,gapextend

iicc


This function does leave-one-out cross-validation for MEME/MAST.  In this case, a set of nucleotide sequences is lined up MUSCLE and CLUSTALW.  This is main difference between transMEME and MEME.


MEET (Motif Elements Estimation Toolkit) is a R-package
that integrates a set of computational algorithms for the
detection of Transcription Factor Binding Sites (TFBS).

kfold.transMEME: Leave-one-out cross-validation for MEME/MAST through training.matrix aligned with MUSCLE or CLUSTALW.

Description

Usage

Arguments

Details

See Also