MEET (version 5.1.1)

motif.mast: MEME format to training matrix

Description

Given a set of DNA sequences in fasta format, this function converts this set of sequences in a training matrix

Usage

motif.mast(input,Factortrans,k,m)

Arguments

input

a set of DNA seqeunces in fasta format

Factortrans

Transcription Factor Binding Sites

k

Length of the candidate sequence

m

Binnding Sites sequences that is extracted from training matrix