Learn R Programming

MEIGOR (version 1.6.0)

MEIGO - MEtaheuristics for bIoinformatics Global Optimization

Description

Global Optimization

Copy Link

Version

Version

1.6.0

License

GPL-3

Maintainer

Jose Egea

Last Published

February 15th, 2017

Functions in MEIGOR (1.6.0)

ssm_round_int

Rounds variables declared as integer of binary
dhc

Local search algorithm within eSS
cnolist

A CNOlist from CellNOptR paclage
solnp_ineq

Gateway function to evaluate the inequality constraints when solnp is invoked as local solver
ssm_localsolver

Configure local solver
optim_fobj

Gateway function to evaluate the objective function when the local solvers are invoked.
essR-package

Global optimization algorithm for MINLPs based on Scatter Search
ssm_optset

Assigns values to the options defined by the user
BayesFit

BayesFit
essR_multistart

Multistart function for eSS
solnp_eq

Gateway function to evaluate the equality constraints when solnp is invoked as local solver
vns_defaults

Default options for VNS
cur_params

Current values of all model parameters
ssm_defaults

Sets the default options for eSSR
runBayesFit

Running the BayesFit optimisation
ssm_isdif2

Calculates relative errors between two vectors
ith_VNSR

Auxiliary function to perform parallel runs
ssm_beyond

Function that expands the search direction when a good offspring solution has been found
rvnds_hamming

Main VNS function
eucl_dist

Computes the euclidean distance between the rows of two different matrices
paramsOpt

Optimal parameters for simulation with CNORode
ssm_evalfc

Gateway function to evaluate the objective function in essR
MEIGOR-package

Global optimization Toolbox
solnp_fobj

Gateway function to evaluate the objective function when solnp is invoked as local solver
essR

Global optimization algorithm for MINLPs based on Scatter Search
vns_optset

Set VNS options
CeSSR

Global optimization algorithm for MINLPs based on Scatter Search using a Cooperative Strategy
model

A model from CellNoptR
nls_fobj

Auxiliary function to evaluate constraints
ssm_penalty_function

Calculates the penalized objective function in constrained problems
CeVNSR

Global optimization algorithm for MINLPs based on VNS using a Cooperative Strategy
MEIGO

MEIGO main function
ith_essR

Auxiliary function to perform parallel runs
rvnds_local

Local search in VNS