base_erlang_F

This function takes ALL of the adult female stages and summarized them by
Erlang-distributed latent infection, writing output to provided folders.

A simulation modeling framework which significantly extends capabilities from the
'MGDrivE' simulation package via a new mathematical and computational framework based on stochastic Petri nets.
For more information about 'MGDrivE', see our publication: Sánchez et al. (2019) <doi:10.1111/2041-210X.13318>
Some of the notable capabilities of 'MGDrivE2' include: incorporation of human populations,
epidemiological dynamics, time-varying parameters, and a continuous-time simulation
framework with various sampling algorithms for both deterministic and stochastic interpretations.
'MGDrivE2' relies on the genetic inheritance structures provided in package 'MGDrivE', so we
suggest installing that package initially.

Agastya Mondal

MGDrivE2

Mosquito Gene Drive Explorer 2

Sean L. Wu

Jared B. Bennett

Héctor Manuel Sánchez Castellanos

Tomás M. León

Andrew J. Dolgert

John M. Marshall

base_erlang_F function

<dl><dt>fileList</dt>
<dd>Length 3 list holding 'FS','FE', and 'FI' files for analysis</dd>
<dt>outList</dt>
<dd>List of files, organized by repetition, to write output</dd>
<dt>nGenos</dt>
<dd>Number of genotypes</dd>
<dt>nErlang</dt>
<dd>Number of Erlang stages</dd>
<dt>times</dt>
<dd>Vector of sampling times</dd>
<dt>nTimes</dt>
<dd>Number of sampled times</dd>
<dt>nNodes</dt>
<dd>Number of nodes in the network</dd></dl>

Arguments

Base Summary of Erlang Stages for Adult Females — base_erlang_F

<dl>

<dt>fileList</dt>
<dd>Length 3 list holding 'FS','FE', and 'FI' files for analysis</dd>


<dt>outList</dt>
<dd>List of files, organized by repetition, to write output</dd>


<dt>nGenos</dt>
<dd>Number of genotypes</dd>


<dt>nErlang</dt>
<dd>Number of Erlang stages</dd>


<dt>times</dt>
<dd>Vector of sampling times</dd>


<dt>nTimes</dt>
<dd>Number of sampled times</dd>


<dt>nNodes</dt>
<dd>Number of nodes in the network</dd>

</dl>

base_erlang_F: Base Summary of Erlang Stages for Adult Females

Description

Usage

Value

Arguments

Details