spn_P_epi_decoupled_node

The <code>params</code> argument supplies all of the ecological parameters necessary
to calculate equilibrium values. This function requires the <code>nE</code>,
<code>nL</code>, <code>nP</code>, and <code>nEIP</code> parameters to be specified. For more details, see
<code>equilibrium_SEI_SIS</code>

A simulation modeling framework which significantly extends capabilities from the
'MGDrivE' simulation package via a new mathematical and computational framework based on stochastic Petri nets.
For more information about 'MGDrivE', see our publication: Sánchez et al. (2019) <doi:10.1111/2041-210X.13318>
Some of the notable capabilities of 'MGDrivE2' include: incorporation of human populations,
epidemiological dynamics, time-varying parameters, and a continuous-time simulation
framework with various sampling algorithms for both deterministic and stochastic interpretations.
'MGDrivE2' relies on the genetic inheritance structures provided in package 'MGDrivE', so we
suggest installing that package initially.

Agastya Mondal

MGDrivE2

Mosquito Gene Drive Explorer 2

Sean L. Wu

Jared B. Bennett

Héctor Manuel Sánchez Castellanos

Tomás M. León

Andrew J. Dolgert

John M. Marshall

spn_P_epi_decoupled_node function

<dl><dt>params</dt>
<dd>a named list of parameters (see details)</dd>
<dt>cube</dt>
<dd>an inheritance cube from the <code>MGDrivE</code> package (e.g. <code>cubeMendelian</code>)</dd></dl>

Arguments

Make Places (P) For a Node (SEI Mosquitoes). Note in the v2 epi module, we only
use the SPN framework for the mosquito component of the model. The human compoenent
will be handled separately in the sampler, and will be formulated as an ODE.
This function makes the set of places (P) for a SPN. It is used alone if our model
is a single-node metapopulation for mosquito SEI and dynamics; This is used by both
SIS and Imperial transmission models. — spn_P_epi_decoupled_node

<dl>

<dt>params</dt>
<dd>a named list of parameters (see details)</dd>


<dt>cube</dt>
<dd>an inheritance cube from the <code>MGDrivE</code> package (e.g. <code>cubeMendelian</code>)</dd>

</dl>

Make Places (P) For a Node (SEI Mosquitoes). Note in the v2 epi module, we only
use the SPN framework for the mosquito component of the model. The human compoenent
will be handled separately in the sampler, and will be formulated as an ODE.
This function makes the set of places (P) for a SPN. It is used alone if our model
is a single-node metapopulation for mosquito SEI and dynamics; This is used by both
SIS and Imperial transmission models.

Description

Usage

Value

Arguments

Details