MHCtools (version 1.2.1)

CreateSamplesFas: CreateSamplesFas() function

Description

CreateSamplesFas creates a set of FASTA files with the sequences present in each sample in a 'dada2' sequence table.

Usage

CreateSamplesFas(seq_table, path_out)

Arguments

seq_table

seq_table is a sequence table as output by the 'dada2' pipeline, which has samples in rows and nucleotide sequence variants in columns.

path_out

is a user defined path to the folder where the output files will be saved.

Value

A set of FASTA files with the sequences present in each sample in the sequence table.The sequences are named in the FASTA files by an index number corresponding to their column number in the sequence table, thus identical sequences will have identical sample names in all the FASTA files.

See Also

CreateFas; for more information about 'dada2' visit <https://benjjneb.github.io/dada2>

Examples

Run this code
# NOT RUN {
seq_table <- sequence_table_fas
path_out <- tempdir()
CreateSamplesFas(seq_table, path_out)
# }

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