example_mics

Example minimum inhibitory concentration validation data for three
antimicrobials on Escherichia coli strains. This data is synthetic and
generated to give an example of different MIC distribution.

datasets

Analyse, plot, and tabulate antimicrobial minimum inhibitory concentration (MIC) data.
Validate the results of an MIC experiment by comparing observed MIC values to
a gold standard assay, in line with standards from the International Organization for
Standardization (2021) <https://www.iso.org/standard/79377.html>. Perform MIC prediction from
whole genome sequence data stored in the Pathosystems Resource Integration Center (2013)
<doi:10.1093/nar/gkt1099> database or locally.

Alessandro Gerada

Analysis of Antimicrobial Minimum Inhibitory Concentration Data

example_mics function

<div class="section" id="example-mics">
<h3><code>example_mics</code></h3>
A data frame with 300 rows and 4 columns:<dl>
<dt>gs</dt>
<dd>Gold standard MICs</dd><dt>test</dt>
<dd>Test MICs</dd><dt>mo</dt>
<dd>Microorganism code in AMR::mo format</dd><dt>ab</dt>
<dd>Antibiotic code in AMR::ab format</dd>
</dl></div>

Format

Example MIC data — example_mics

<div class='section' id='example-mics'>
<h3><code>example_mics</code></h3>


A data frame with 300 rows and 4 columns:<dl>
<dt>gs</dt>
<dd>Gold standard MICs</dd>

<dt>test</dt>
<dd>Test MICs</dd>

<dt>mo</dt>
<dd>Microorganism code in AMR::mo format</dd>

<dt>ab</dt>
<dd>Antibiotic code in AMR::ab format</dd>


</dl>

</div>

example_mics: Example MIC data

Description

Usage

Arguments

Format

`example_mics`