squeezed_index_to_str

Get str conversion of squeezed kmer using index

Analyse, plot, and tabulate antimicrobial minimum inhibitory concentration (MIC) data.
Validate the results of an MIC experiment by comparing observed MIC values to
a gold standard assay, in line with standards from the International Organization for
Standardization (2021) <https://www.iso.org/standard/79377.html>. Perform MIC prediction from
whole genome sequence data stored in the Pathosystems Resource Integration Center (2013)
<doi:10.1093/nar/gkt1099> database or locally.

Alessandro Gerada

Analysis of Antimicrobial Minimum Inhibitory Concentration Data

squeezed_index_to_str function

<dl><dt>x</dt>
<dd>integer vector of kmer indices</dd>
<dt>k</dt>
<dd>kmer length</dd>
<dt>starting_index</dt>
<dd>starting index (libsvm is usually indexed starting at 1)</dd></dl>

Arguments

Get str conversion of squeezed kmer using index — squeezed_index_to_str

<dl>

<dt>x</dt>
<dd>integer vector of kmer indices</dd>


<dt>k</dt>
<dd>kmer length</dd>


<dt>starting_index</dt>
<dd>starting index (libsvm is usually indexed starting at 1)</dd>

</dl>

squeezed_index_to_str: Get str conversion of squeezed kmer using index

Description

Usage

Value

Arguments

Examples