squeezed_mers

Generates all permutations of squeezed kmers

Analyse, plot, and tabulate antimicrobial minimum inhibitory concentration (MIC) data.
Validate the results of an MIC experiment by comparing observed MIC values to
a gold standard assay, in line with standards from the International Organization for
Standardization (2021) <https://www.iso.org/standard/79377.html>. Perform MIC prediction from
whole genome sequence data stored in the Pathosystems Resource Integration Center (2013)
<doi:10.1093/nar/gkt1099> database or locally.

Alessandro Gerada

Analysis of Antimicrobial Minimum Inhibitory Concentration Data

squeezed_mers function

<dl><dt>k</dt>
<dd>kmer length</dd></dl>

Arguments

Generates all permutations of squeezed kmers — squeezed_mers

<dl>

<dt>k</dt>
<dd>kmer length</dd>

</dl>

squeezed_mers: Generates all permutations of squeezed kmers

Description

Usage

Value

Arguments

Examples