MIDASim (version 2.0)

count.ibd: IBD microbiome dataset

Description

A filtered microbiome dataset of patients with IBD(Inflammatory Bowel Disease) in Human Microbiome Project 2 (HMP2).

Usage

data(count.ibd)

Format

An object of class matrix (inherits from array) with 146 rows and 614 columns.

References

Lloyd-Price, J., Arze, C., Ananthakrishnan, A.N. *et al*. Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases. *Nature* 569, 655–662 (2019). https://doi.org/10.1038/s41586-019-1237-9.

Examples

data(count.ibd)
# \donttest{
MIDASim.setup(otu.tab = count.ibd, mode = "nonparametric")# }