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MKmisc (version 1.0)

Miscellaneous Functions from M. Kohl

Description

Contains several functions for statistical data analysis; e.g. for sample size and power calculations, computation of confidence intervals, and generation of similarity matrices.

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Version

Install

install.packages('MKmisc')

Monthly Downloads

600

Version

1.0

License

LGPL-3

Maintainer

Matthias Kohl

Last Published

March 8th, 2018

Functions in MKmisc (1.0)

AUC

Compute AUC
pairwise.fun

Compute pairwise values for a given function
pairwise.logfc

Compute pairwise log-fold changes
print.confint

Print Method for Confidence Intervals
qboxplot

Box Plots
simPlot

Plot of a similarity matrix.
ssize.pcc

Sample Size Planning for Developing Classifiers Using High Dimensional Data
corDist

Correlation Distance Matrix Computation
corPlot

Plot of similarity matrix based on correlation
AUC.test

AUC-Test
madMatrix

Compute MAD between colums of a matrix or data.frame
HLgof.test

Hosmer-Lemeshow goodness of fit tests.
pairwise.auc

Compute pairwise AUCs
madPlot

Plot of similarity matrix based on MAD
pairwise.fc

Compute pairwise fold changes
repMeans

Compute mean of replicated spots
fiveNS

Five-Number Summaries
risks

Compute RR, OR, etc.
qbxp.stats

Box Plot Statistics
quantileCI

Confidence Intervals for Quantiles
thyroid

Plot TSH, fT3 and fT4 with respect to reference range.
heatmapCol

Generate colors for heatmaps
normCI

Confidence Intervals for Mean and Standard Deviation
mi.t.test

Multiple Imputation Student's t-Test
traceBack

Function to trace back
perfMeasures

Compute Performance Measures for Binary Classification
rrCI

Compute Approximate Confidence Interval for RR.
power.diagnostic.test

Power calculations for a diagnostic test
twoWayAnova

A function for Analysis of Variance
simCorVars

Simulate correlated variables.
IQrange

The Interquartile Range
binomCI

Confidence Intervals for Binomial Proportions
oneWayAnova

A function for Analysis of Variance
or2rr

Transform OR to RR
power.nb.test

Power calculation for comparing two negative binomial rates
predValues

Compute PPV and NPV.
stringDist

Function to compute distances between strings
stringSim

Function to compute similarity scores between strings
MKmisc-package

Miscellaneous Functions from M. Kohl.