Similarity plots based on correlation and median absolute deviation (MAD); adjusting colors for heatmaps; aggregate technical replicates; calculate pairwise fold-changes and log fold-changes; computate one- and two-way ANOVA; simplified interface to package 'limma' (Ritchie et al. (2015), <doi:10.1093/nar/gkv007>) for moderated t-test and one-way ANOVA; Hamming and Levenshtein (edit) distance of strings as well as optimal alignment scores for global (Needleman-Wunsch) and local (Smith-Waterman) alignments with constant gap penalties (Merkl and Waack (2009), ISBN:978-3-527-32594-8).
| Package: | MKomics |
| Type: | Package |
| Version: | 0.7 |
| Date: | 2021-08-08 |
| Depends: | R(>= 3.5.0) |
| Imports: | stats, utils, graphics, grDevices, RColorBrewer, robustbase, limma |
| Suggests: | knitr, rmarkdown |
| License: | LGPL-3 |
| URL: | https://www.stamats.de/ |
library(MKomics)