MLInterfaces v1.52.0
by Vince Carey
Uniform interfaces to R machine learning procedures for data in Bioconductor containers
This package provides uniform interfaces to machine
learning code for data in R and Bioconductor containers.
Functions in MLInterfaces
| Name | Description | |
| MLIntInternals | MLInterfaces infrastructure | |
| confuTab | Compute confusion tables for a confusion matrix. | |
| learnerSchema-class | Class "learnerSchema" -- convey information on a machine learning function to the MLearn wrapper | |
| hclustWidget | shiny-oriented GUI for cluster or classifier exploration | |
| fs.absT | support for feature selection in cross-validation | |
| clusteringOutput-class | container for clustering outputs in uniform structure | |
| confuMat-methods | Compute the confusion matrix for a classifier. | |
| projectedLearner-class | Class "projectedLearner" | |
| fsHistory | extract history of feature selection for a cross-validated machine learner | |
| performance-analytics | Assessing classifier performance | |
| varImpStruct-class | Class "varImpStruct" -- collect data on variable importance from various machine learning methods | |
| RAB | real adaboost (Friedman et al) | |
| xvalSpec | container for information specifying a cross-validated machine learning exercise | |
| balKfold.xvspec | generate a partition function for cross-validation, where the partitions are approximately balanced with respect to the distribution of a response variable | |
| projectLearnerToGrid | create learned tesselation of feature space after PC transformation | |
| plspinHcube | shiny app for interactive 3D visualization of mlbench hypercube | |
| MLearn | revised MLearn interface for machine learning | |
| planarPlot-methods | Methods for Function planarPlot in Package `MLInterfaces' | |
| predict.classifierOutput | Predict method for classifierOutput objects | |
| raboostCont-class | Class "raboostCont" ~~~ | |
| classifierOutput-class | Class "classifierOutput" | |
| xvalLoop | Cross-validation in clustered computing environments | |
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| License | LGPL |
| LazyLoad | yes |
| Collate | AllClasses.R RAB.R pplot.R varImp.R xval.R MLearn.R MLIConverters.R MLIPredicters.R localBridge.R methods-classifierOutput.R methods-clusteringOutput.R methods-learnerSchema.R schemaInterfaces.R featSel.R partPlot.R clDesign.R plsdaI.R performance-analytics.R hcw.R mlw.R pv.R plspinHcube.R |
| biocViews | Classification, Clustering |
| suggests | ada , ALL , caret (>= 5.07) , class , e1071 , golubEsets , gpls , hgu95av2 , hgu95av2.db , hu6800 , hu6800.db , ipred , keggorthology , kernlab , lattice , mboost , nnet , pamr , party , randomForest , som |
| depends | annotate , base (>= 2.9) , Biobase , BiocGenerics (>= 0.13.11) , cluster , methods , R (>= 2.9) |
| imports | fpc , gbm , gdata , genefilter , ggvis , hwriter , MASS , mlbench , pls , RColorBrewer , rda , rgl , rpart , sfsmisc , shiny , stats4 , threejs (>= 0.2.2) |
| enhances | parallel |
| Contributors | Vince Carey, Jess Mar, Robert Gentleman |
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