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The implemented methods reach out to scientists that seek to estimate multiplicity of infection (MOI) and lineage (allele) frequencies and prevalences at molecular markers using the maximum-likelihood method described in Schneider (2018) <doi:10.1371/journal.pone.0194148>, and Schneider and Escalante (2014) <doi:10.1371/journal.pone.0097899>. Users can import data from Excel files in various formats, and perform maximum-likelihood estimation on the imported data by the package's moimle() function.

Meraj Hashemi

MLMOI

Estimating Frequencies, Prevalence and Multiplicity of Infection

Kristan Schneider

mle function

<dl><dt>nnk</dt>
<dd>numeric vector; vector of lineage prevalence
counts.</dd>
<dt>nn</dt>
<dd>numeric; sample size</dd></dl>

Arguments

Derives MLE — mle

<dl>

<dt>nnk</dt>
<dd>numeric vector; vector of lineage prevalence
counts.</dd>


<dt>nn</dt>
<dd>numeric; sample size</dd>

</dl>

mle: Derives MLE

Description

Usage

Value

Arguments

See Also