For a specific marker, the function goes
from one sample to another and finds lineages with the
help of the following functions:
corrector_numeric
along with
decoder_str
,
corrector_string
along with
decoder_aminoacid
and
corrector_string
along with
decoder_snp
. Each of these functions are
suitable for a particular type of molecular data.
moi_marker(
col_j,
c_l,
sam,
samorder,
conm,
cons,
molecular,
coding,
cha_num,
cha_string,
ambeguity_code,
represented_bases,
aa_1,
aa_2,
let_3,
amino_acid,
aa_symbol,
compact,
codon_s,
rw_col,
multsh
)
a list with the following elements: 1) a list with elements containing lineages for a specific sample on a specific marker. The order in which samples are entered in dataset is preserved in the list. The lineages are free from typos and are transformed to pre-specified coding class, 2) an identifier whose value is 1 if a warning takes place.
vector; column vector of a specific marker.
string; marker label.
numeric vector; vector which its elements specify where a new sample starts.
a vector which its elements specify where a new sample starts.
numeric; the multiple column identifier. For the data of format multiple columns conm > 1.
numeric; the multiple row identifier. For the data of format multiple rows conm > 1.
string; type of molecular data.
string; coding class of the molecular marker.
string vector; vector of symbols (used for microsatellite data).
string vector; vector of symbols (used for snp and amino acid).
string vector; ambeguity codes for snp data.
string vector; represented bases for those ambeguity codes.
string vector; vector of different amino acids.
string vector; vector of different codons.
string vector; vector of amino acids in 3-letter designation.
string vector; vector of amino acids in full name.
string vector; vector of amino acids in one letter designation.
string vector; vector of different codons in compact form.
string vector; vector of different codons.
string vector; variable used to switch
between row and column in case of transposed data.
Namely, c("rows ", "row ", "column ", "columns
")
.
string; reports warnings for multiple worksheet datasets.
For further details, please see the following
functions: moimport