moi_mergemetadata

internal

The implemented methods reach out to scientists that seek to estimate multiplicity of infection (MOI) and lineage (allele) frequencies and prevalences at molecular markers using the maximum-likelihood method described in Schneider (2018) <doi:10.1371/journal.pone.0194148>, and Schneider and Escalante (2014) <doi:10.1371/journal.pone.0097899>. Users can import data from Excel files in various formats, and perform maximum-likelihood estimation on the imported data by the package's moimle() function.

Meraj Hashemi

MLMOI

Estimating Frequencies, Prevalence and Multiplicity of Infection

Kristan Schneider

moi_mergemetadata function

<dl><dt>tempmtd</dt>
<dd>matrix; matrix of temporary metadata.</dd>
<dt>mtdall</dt>
<dd>string vector; vector of all metadata
labels.</dd>
<dt>samall</dt>
<dd>string vector; vector of all sample IDs in
the worksheet.</dd>
<dt>multsh</dt>
<dd>string; reports warnings for multiple
worksheet datasets.</dd></dl>

Arguments

Merges metadata — moi_mergemetadata

<dl>

<dt>tempmtd</dt>
<dd>matrix; matrix of temporary metadata.</dd>


<dt>mtdall</dt>
<dd>string vector; vector of all metadata
labels.</dd>


<dt>samall</dt>
<dd>string vector; vector of all sample IDs in
the worksheet.</dd>


<dt>multsh</dt>
<dd>string; reports warnings for multiple
worksheet datasets.</dd>

</dl>

moi_mergemetadata: Merges metadata

Description

Usage

Value

Arguments

See Also