moi_nk

internal

The implemented methods reach out to scientists that seek to estimate multiplicity of infection (MOI) and lineage (allele) frequencies and prevalences at molecular markers using the maximum-likelihood method described in Schneider (2018) <doi:10.1371/journal.pone.0194148>, and Schneider and Escalante (2014) <doi:10.1371/journal.pone.0097899>. Users can import data from Excel files in various formats, and perform maximum-likelihood estimation on the imported data by the package's moimle() function.

Meraj Hashemi

MLMOI

Estimating Frequencies, Prevalence and Multiplicity of Infection

Kristan Schneider

moi_nk function

<dl><dt>datmarker</dt>
<dd>vector; a column of data corresponding
to a marker from the imported dataset.</dd>
<dt>samorder</dt>
<dd>numeric vector; row numbers in excel file
where the new samples start.</dd></dl>

Arguments

Derives lineage prevalence counts — moi_nk

<dl>

<dt>datmarker</dt>
<dd>vector; a column of data corresponding
to a marker from the imported dataset.</dd>


<dt>samorder</dt>
<dd>numeric vector; row numbers in excel file
where the new samples start.</dd>

</dl>

moi_nk: Derives lineage prevalence counts

Description

Usage

Value

Arguments

See Also