moi_warning

This function exports the modified
dataset in standard format to a new excel file.

internal

The implemented methods reach out to scientists that seek to estimate multiplicity of infection (MOI) and lineage (allele) frequencies and prevalences at molecular markers using the maximum-likelihood method described in Schneider (2018) <doi:10.1371/journal.pone.0194148>, and Schneider and Escalante (2014) <doi:10.1371/journal.pone.0097899>. Users can import data from Excel files in various formats, and perform maximum-likelihood estimation on the imported data by the package's moimle() function.

Meraj Hashemi

MLMOI

Estimating Frequencies, Prevalence and Multiplicity of Infection

Kristan Schneider

moi_warning function

<dl><dt>keepwarnings</dt>
<dd>string; the path where the
warnings are stored.</dd>
<dt>general_warnings</dt>
<dd>list; general warnings.</dd>
<dt>metadata_warnings</dt>
<dd>list; metadata warnings.</dd>
<dt>marker_warnings</dt>
<dd>list; marker warnings.</dd>
<dt>markerlabels</dt>
<dd>string vector; marker labels.</dd></dl>

Arguments

Writes warnings into a file — moi_warning

<dl>

<dt>keepwarnings</dt>
<dd>string; the path where the
warnings are stored.</dd>


<dt>general_warnings</dt>
<dd>list; general warnings.</dd>


<dt>metadata_warnings</dt>
<dd>list; metadata warnings.</dd>


<dt>marker_warnings</dt>
<dd>list; marker warnings.</dd>


<dt>markerlabels</dt>
<dd>string vector; marker labels.</dd>

</dl>

moi_warning: Writes warnings into a file

Description

Usage

Value

Arguments

See Also