MM2Sdata (version 1.0.3)

GSE36594Expr: Normalized gene expression data for Mouse MB samples (from GSE36594).

Description

Gene expression for 20 GTML Medulloblastoma mouse samples, normalized using expresso and BrainArray CDFs (see references for details).

PLEASE NOTE: The full processed GSE36594 dataset, which contains 56 samples, can be accessed from the following locations: https://github.com/DGendoo/MM2Sdata http://www.pmgenomics.ca/bhklab/software/mm2s

Usage

data(GSE36594Expr)

Value

Data and annotations are organized in a ExpressionSet of the package Biobase.

pData

phenoData containing mouse sample genotype and origin

exprs

ExpressionSet with 23783 EntrezIds and 20 samples

fData

List of 23783 EntrezIds

References

Gendoo, D. M., Smirnov, P., Lupien, M. & Haibe-Kains, B. Personalized diagnosis of medulloblastoma subtypes across patients and model systems. Genomics, doi:10.1016/j.ygeno.2015.05.002 (2015)

Manuscript URL: http://www.sciencedirect.com/science/article/pii/S0888754315000774

Examples

# NOT RUN {
data(GSE36594Expr)

# To install from github, please run the following commands in your R terminal:
# library(Biobase)
# library(devtools)
# install_github(repo="DGendoo/MM2Sdata")
# data(GSE36594Expr)
# }