MMDiff (version 1.12.0)

plotDISTS4Peak: plotDISTS4Peak

Description

showing all distances for one region

Usage

plotDISTS4Peak(MD, Peak.id, dist.method = "MMD", whichContrast = 1,
  Zoom = TRUE, xlim = NULL, ylim = NULL, xlog10 = TRUE, title = NULL)

Arguments

MD

DBAmmd Object. This Object can be created using DBAmmd().

Peak.id

Peak id to specify which Peak to plot. (coresponding to names of Regions(MD))

dist.method

specify method used for distances between samples. Currently only Maximum Mean Discrepancy (MMD) and Kolmogorov-Smirnov (KS) implemented. (DEFAULT: 'MMD')

whichContrast

index determining which of the set contrast should be used. (DEFAULT: 1)

Zoom

(DEFAULT: TRUE)

xlim

specify x range (DEFAULT: NULL)

ylim

specify y range (DEFAULT: NULL)

xlog10

should x range be plotted in log10 scale (DEFAULT: TRUE)

title

(DEFAULT: NULL)

Examples

dev.off()
load(system.file("data/MMD.RData", package="MMDiff2"))
plotDISTS4Peak(MMD,Peak.id = '6',dist.method='MMD', whichContrast=1)