MPR.genotyping (version 0.8)

base2Geno: Formatting the Matrix of SNP to Int Type

Description

formatting the matrix of snp to int type

Usage

base2Geno(baseData = NULL, allele.matrix = NULL)

Arguments

baseData

the matrix of snp

allele.matrix

the allele of each snp site

Value

returned a matrix which have same size of matrix of snp, but "A","G","C","T" become "1","0","-1".

Details

the snp from parent1 will become 1, the snp is not detected by sequencing will become 0, the snp from parent2 will become -1.

See Also

globalMPRByMarkers

Examples

# NOT RUN {
base=matrix(c("A",NA,"G",
		NA,"T","A",
		"C","G",NA),3,3,byrow=TRUE)
allele=matrix(c("A","G",
			"T","A",
			"C","G"),3,2,byrow=TRUE)
base2Geno(base,allele)
# }